pyopal
0.6.0
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Examples
Contributing
API Reference
Changelog
Index
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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Q
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R
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S
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T
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__delitem__() (pyopal.Database method)
__getitem__() (pyopal.Alphabet method)
(pyopal.BaseDatabase method)
(pyopal.Database method)
__init__() (pyopal.Aligner method)
(pyopal.Alphabet method)
(pyopal.BaseDatabase method)
(pyopal.Database method)
(pyopal.EndResult method)
(pyopal.FullResult method)
(pyopal.ScoreResult method)
__len__() (pyopal.Alphabet method)
(pyopal.BaseDatabase method)
__setitem__() (pyopal.Database method)
__str__() (pyopal.Alphabet method)
A
align() (in module pyopal)
(pyopal.Aligner method)
Aligner (class in pyopal)
alignment (pyopal.FullResult attribute)
Alphabet (class in pyopal)
alphabet (pyopal.Aligner attribute)
(pyopal.BaseDatabase attribute)
append() (pyopal.Database method)
B
BaseDatabase (class in pyopal)
C
cigar() (pyopal.FullResult method)
clear() (pyopal.Database method)
coverage() (pyopal.FullResult method)
D
Database (class in pyopal)
decode() (pyopal.Alphabet method)
decode_into() (pyopal.Alphabet method)
E
encode() (pyopal.Alphabet method)
encode_into() (pyopal.Alphabet method)
EndResult (class in pyopal)
extend() (pyopal.Database method)
extract() (pyopal.Database method)
F
FullResult (class in pyopal)
G
gap_extend (pyopal.Aligner attribute)
gap_open (pyopal.Aligner attribute)
get_lengths (C function)
get_sequences (C function)
get_size (C function)
I
identity() (pyopal.FullResult method)
insert() (pyopal.Database method)
L
lengths (pyopal.BaseDatabase attribute)
lock (pyopal.BaseDatabase attribute)
M
mask() (pyopal.Database method)
Q
query_end (pyopal.EndResult attribute)
(pyopal.FullResult attribute)
query_length (pyopal.FullResult attribute)
query_start (pyopal.FullResult attribute)
R
reverse() (pyopal.Database method)
S
score (pyopal.EndResult attribute)
(pyopal.FullResult attribute)
(pyopal.ScoreResult attribute)
ScoreResult (class in pyopal)
scoring_matrix (pyopal.Aligner attribute)
T
target_end (pyopal.EndResult attribute)
(pyopal.FullResult attribute)
target_index (pyopal.EndResult attribute)
(pyopal.FullResult attribute)
(pyopal.ScoreResult attribute)
target_length (pyopal.FullResult attribute)
target_start (pyopal.FullResult attribute)
total_length (pyopal.BaseDatabase attribute)