Index _ | A | B | C | D | E | F | G | I | L | M | Q | R | S | T _ __delitem__() (pyopal.Database method) __getitem__() (pyopal.Alphabet method) (pyopal.BaseDatabase method) (pyopal.Database method) __init__() (pyopal.Aligner method) (pyopal.Alphabet method) (pyopal.BaseDatabase method) (pyopal.Database method) (pyopal.EndResult method) (pyopal.FullResult method) (pyopal.ScoreResult method) __len__() (pyopal.Alphabet method) (pyopal.BaseDatabase method) __setitem__() (pyopal.Database method) __str__() (pyopal.Alphabet method) A align() (in module pyopal) (pyopal.Aligner method) Aligner (class in pyopal) alignment (pyopal.FullResult attribute) Alphabet (class in pyopal) alphabet (pyopal.Aligner attribute) (pyopal.BaseDatabase attribute) append() (pyopal.Database method) B BaseDatabase (class in pyopal) C cigar() (pyopal.FullResult method) clear() (pyopal.Database method) coverage() (pyopal.FullResult method) D Database (class in pyopal) decode() (pyopal.Alphabet method) decode_into() (pyopal.Alphabet method) E encode() (pyopal.Alphabet method) encode_into() (pyopal.Alphabet method) EndResult (class in pyopal) extend() (pyopal.Database method) extract() (pyopal.Database method) F FullResult (class in pyopal) G gap_extend (pyopal.Aligner attribute) gap_open (pyopal.Aligner attribute) get_lengths (C function) get_sequences (C function) get_size (C function) I identity() (pyopal.FullResult method) insert() (pyopal.Database method) L lengths (pyopal.BaseDatabase attribute) lock (pyopal.BaseDatabase attribute) M mask() (pyopal.Database method) Q query_end (pyopal.EndResult attribute) (pyopal.FullResult attribute) query_length (pyopal.FullResult attribute) query_start (pyopal.FullResult attribute) R reverse() (pyopal.Database method) S score (pyopal.EndResult attribute) (pyopal.FullResult attribute) (pyopal.ScoreResult attribute) ScoreResult (class in pyopal) scoring_matrix (pyopal.Aligner attribute) T target_end (pyopal.EndResult attribute) (pyopal.FullResult attribute) target_index (pyopal.EndResult attribute) (pyopal.FullResult attribute) (pyopal.ScoreResult attribute) target_length (pyopal.FullResult attribute) target_start (pyopal.FullResult attribute) total_length (pyopal.BaseDatabase attribute)